FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane3_Index7_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 21921007 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GAAGA | 4732000 | 2.5873263 | 5.1292367 | 2 |
| CCAGG | 4580020 | 2.5687783 | 5.4521885 | 1 |
| CCTGG | 4593045 | 2.561896 | 6.109668 | 1 |
| CTTCT | 4832940 | 2.5598202 | 5.984766 | 1 |
| AAGAA | 4718895 | 2.528214 | 5.1229496 | 2 |
| CTGGA | 4479200 | 2.4668057 | 9.229956 | 1 |
| CTGCT | 4359140 | 2.3693557 | 5.2361827 | 1 |
| TCCAG | 4334635 | 2.3690834 | 5.5329638 | 2 |
| CTCCT | 4276480 | 2.306796 | 7.469122 | 1 |
| CTGGG | 4032320 | 2.2663264 | 8.73944 | 1 |
| CAGGA | 4041505 | 2.2380817 | 5.605443 | 1 |
| CTTCA | 4176595 | 2.2244303 | 6.109033 | 1 |
| CTCCA | 4037465 | 2.1899285 | 7.9183965 | 1 |
| CCCAG | 3882970 | 2.1613078 | 7.2253213 | 1 |
| CAGAA | 3887395 | 2.109398 | 5.254989 | 1 |
| CTCTG | 3756780 | 2.0419505 | 6.759508 | 1 |
| CTGGC | 3377120 | 1.8836809 | 5.537548 | 1 |
| CTGAA | 3463055 | 1.8687916 | 5.9979434 | 1 |
| TGGAA | 3436395 | 1.8685777 | 5.333617 | 2 |
| CTTTT | 3500145 | 1.8203683 | 5.3542986 | 1 |
| CTCAG | 3189000 | 1.7429396 | 6.4341993 | 1 |
| CTGAG | 3160370 | 1.7404934 | 5.1682343 | 1 |
| CTTTG | 3199780 | 1.707752 | 5.4207397 | 1 |
| CTGGT | 3060795 | 1.6763716 | 5.309484 | 1 |
| CTTGG | 3000850 | 1.6435403 | 5.6722775 | 1 |
| CTCCC | 2812050 | 1.544794 | 5.028652 | 1 |